The Virtual Brain Project

Table Of Contents

GUI Demos
Python Demos
- Interact with TVB Framework
- Mouse
MATLAB Demos

Previous topic

Modeling Epilepsy

Next topic

Reduced Wong-Wang model

This Page

GUI Demos¶

The links in this section showcase TVB’s web interface.

Simulation¶

../_images/simulator_phase_plane_interactive.jpg

Exploring a Model phase space.

../_images/simulator.jpg

Launch a simulation.

Data Management¶

../_images/data.jpg

View the data types in a project

../_images/default_operations.jpg

Operations executed in the project

Visualizers¶

../_images/visualizer_timeseries_svgd3.jpg

Time series view

../_images/visualizer_brain.jpg

3D brain activity view

../_images/visualizer_dual_head_eeg.jpg

Dual Brain Activity Visualizer

../_images/visualizer_tsv.jpg

Volume Visualizer

../_images/connectivity_editor.jpg

Connectivity Matrix Editor

Python Demos¶

These tutorials are written as IPython Notebooks and they use the scripting interface of TVB. They can be run interactively if you have TVB’s scientific library and ipython installed.

The first set of “basic” tutorials are listed roughly in the order they should be read, and cover the basic functionality of TVB’s simulator package using very simple examples.

../_images/analyze_region_corrcoef.png

Analyze Region Corrcoef

../_images/compare_connectivity_normalization.png

Compare Connectivity Normalization

../_images/compare_integrators.png

Compare Integrators

../_images/display_source_sensor_geometry.png

Display Source Sensor Geometry

../_images/display_surface_local_connectivity.png

Display Surface Local Connectivity

../_images/exploring_longer_time_series.png

Exploring Longer Time Series

../_images/exploring_the_bold_monitor.png

Exploring The Bold Monitor

../_images/exporing_a_surface_mesh.png

Exporing A Surface Mesh

../_images/generate_surrogate_connectivity.png

Generate Surrogate Connectivity

../_images/simulate_bold_continuation.png

Simulate Bold Continuation

../_images/simulate_reduced_wong_wang.png

Simulate Reduced Wong Wang

../_images/simulate_region_bold_stimulus.png

Simulate Region Bold Stimulus

../_images/simulate_region_jansen_rit.png

Simulate Region Jansen Rit

../_images/simulate_region_stimulus.png

Simulate Region Stimulus

../_images/simulate_surface_seeg_eeg_meg.png

Simulate Surface Seeg Eeg Meg

../_images/using_your_own_connectivity.png

Using Your Own Connectivity

Interact with TVB Framework¶

../_images/interacting_with_the_framework.png

Interacting With The Framework

../_images/interacting_with_the_framework.png

Generate TimeSeries for import in Web GUI

Mouse¶

../_images/interacting_with_the_framework.png

Interacting With The Framework and Allen

../_images/simulate_for_mouse.png

Simulate for Mouse

MATLAB Demos¶

These are the first demos of the experimental use of TVB from the MATLAB environment, and they will be expanded in the future.

../_images/tvb_demo_region_rww_01.png

Reduced Wong-Wang model

../_images/tvb_demo_two_epi_01.png

Two Epileptor simulation