TheVirtualBrain:

TheDocumentationwebsite.

Table Of Contents

GUI Demos
Python Demos
MATLAB Demos

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Modeling Epilepsy

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Reduced Wong-Wang model

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GUI Demos¶

The links in this section showcase TVB’s web interface.

Simulation¶

../_images/simulator_phase_plane_interactive.jpg

Exploring a Model phase space.

../_images/simulator.jpg

Launch a simulation.

Data Management¶

../_images/data.jpg

View the data types in a project

../_images/default_operations.jpg

Operations executed in the project

Visualizers¶

../_images/visualizer_timeseries_svgd3.jpg

Time series view

../_images/visualizer_brain.jpg

3D brain activity view

../_images/visualizer_dual_head_eeg.jpg

Dual Brain Activity Visualizer

../_images/visualizer_tsv.jpg

Volume Visualizer

../_images/connectivity_editor.jpg

Connectivity Matrix Editor

Python Demos¶

These tutorials are written as IPython Notebooks and they use the scripting interface of TVB. They can be run interactively if you have TVB’s scientific library and ipython installed.

The first set of “basic” tutorials are listed roughly in the order they should be read, and cover the basic functionality of TVB’s simulator package using very simple examples.

../_images/analyze_region_corrcoef.png

Analyze Region Corrcoef

../_images/compare_connectivity_normalization.png

Compare Connectivity Normalization

../_images/compare_integrators.png

Compare Integrators

../_images/display_source_sensor_geometry.png

Display Source Sensor Geometry

../_images/display_surface_local_connectivity.png

Display Surface Local Connectivity

../_images/exploring_longer_time_series.png

Exploring Longer Time Series

../_images/exploring_the_bold_monitor.png

Exploring The Bold Monitor

../_images/exporing_a_surface_mesh.png

Exporing A Surface Mesh

../_images/generate_surrogate_connectivity.png

Generate Surrogate Connectivity

../_images/interact_client_api_simulation.png

Generate a new model using DSL

../_images/simulate_bold_continuation.png

Simulate Bold Continuation

../_images/simulate_reduced_wong_wang.png

Simulate Reduced Wong Wang

../_images/simulate_region_bold_stimulus.png

Simulate Region Bold Stimulus

../_images/simulate_region_jansen_rit.png

Simulate Region Jansen Rit

../_images/simulate_region_stimulus.png

Simulate Region Stimulus

../_images/simulate_surface_seeg_eeg_meg.png

Simulate Surface Seeg Eeg Meg

../_images/using_your_own_connectivity.png

Using Your Own Connectivity

../_images/stimuli.png

Applying multiple Stimuli

../_images/epileptic_signal.png

Exploring Epileptor 2D

../_images/epileptic_signal.png

Exploring Resting State in Epilepsy

../_images/epileptic_signal.png

Exploring the Epileptor 3D

../_images/epileptic_signal.png

Simulate SEEG for Epileptor with Observation Noise

Interact with TVB Framework¶

../_images/interacting_with_the_framework.png

Interacting With The Framework

../_images/interacting_with_the_framework.png

Generate TimeSeries for import in Web GUI

../_images/interacting_with_the_framework.png

Encrypt Files before upload in TVB Web GUI

Interact with TVB REST Client API¶

../_images/interact_client_api_simulation.png

Interacting with TVBClient API by launching simulation and analyzer methods

../_images/interact_client_api_operation.png

Interacting with TVBClient API importers

Mouse¶

../_images/interacting_with_the_framework.png

Interacting With The Framework and Allen

../_images/simulate_for_mouse.png

Simulate for Mouse

MATLAB Demos¶

These are the first demos of the experimental use of TVB from the MATLAB environment, and they will be expanded in the future.

../_images/tvb_demo_region_rww_01.png

Reduced Wong-Wang model

../_images/tvb_demo_two_epi_01.png

Two Epileptor simulation