TheVirtualBrain:

TheDocumentationwebsite.

Source code for tvb.interfaces.command.demos.importers.h5_import

# -*- coding: utf-8 -*-
#
#
# TheVirtualBrain-Framework Package. This package holds all Data Management, and
# Web-UI helpful to run brain-simulations. To use it, you also need do download
# TheVirtualBrain-Scientific Package (for simulators). See content of the
# documentation-folder for more details. See also http://www.thevirtualbrain.org
#
# (c) 2012-2020, Baycrest Centre for Geriatric Care ("Baycrest") and others
#
# This program is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software Foundation,
# either version 3 of the License, or (at your option) any later version.
# This program is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.  See the GNU General Public License for more details.
# You should have received a copy of the GNU General Public License along with this
# program.  If not, see <http://www.gnu.org/licenses/>.
#
#
#   CITATION:
# When using The Virtual Brain for scientific publications, please cite it as follows:
#
#   Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide,
#   Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013)
#       The Virtual Brain: a simulator of primate brain network dynamics.
#   Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010)
#
#

"""
Launch an operation from the command line

.. moduleauthor:: Lia Domide <lia.domide@codemart.ro>
"""

if __name__ == "__main__":
    from tvb.interfaces.command.lab import *

from tvb.adapters.uploaders.tvb_importer import TVBImporter, TVBImporterModel
from tvb.core.adapters.abcadapter import ABCAdapter
from tvb.core.entities.storage import dao
from tvb.core.services.operation_service import OperationService


[docs]def import_h5(file_path, project_id): service = OperationService() # This ID of a project needs to exists in Db, and it can be taken from the WebInterface: project = dao.get_project_by_id(project_id) adapter_instance = ABCAdapter.build_adapter_from_class(TVBImporter) view_model = TVBImporterModel() view_model.data_file = file_path print("We will try to import file at path " + file_path) # launch an operation and have the results stored both in DB and on disk service.fire_operation(adapter_instance, project.administrator, project.id, view_model=view_model) print("Operation launched. Check the web UI")